Snakemake Wrappers
0.19.0

Wrappers

  • BCFTOOLS
  • BOWTIE2
  • BWA
  • CUTADAPT
  • DELLY
  • FASTQ_SCREEN
  • FASTQC
  • FREEBAYES
  • HISAT2
  • MULTIQC
  • NGS-DISAMBIGUATE
  • PICARD
    • Wrappers
      • PICARD ADDORREPLACEREADGROUPS
      • PICARD COLLECTALIGNMENTSUMMARYMETRICS
      • PICARD COLLECTHSMETRICS
      • PICARD COLLECTINSERTSIZEMETRICS
      • PICARD MARKDUPLICATES
      • PICARD MERGESAMFILES
      • PICARD SORTSAM
  • PINDEL
  • SAMBAMBA
  • SAMTOOLS
  • SICKLE
  • STAR
  • TRIMMOMATIC
  • VCF
Snakemake Wrappers
  • Docs »
  • PICARD
  • Edit on Bitbucket

PICARD¶

Wrappers¶

  • PICARD ADDORREPLACEREADGROUPS
  • PICARD COLLECTALIGNMENTSUMMARYMETRICS
  • PICARD COLLECTHSMETRICS
  • PICARD COLLECTINSERTSIZEMETRICS
  • PICARD MARKDUPLICATES
  • PICARD MERGESAMFILES
  • PICARD SORTSAM
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