Snakemake Wrappers
0.31.0
Wrappers
ART
BCFTOOLS
BOWTIE2
BUSCO
BWA
CUTADAPT
DELLY
EPIC
FASTQ_SCREEN
FASTQC
FGBIO
FREEBAYES
GATK
GATK BASERECALIBRATOR
GATK COMBINEGVCFS
GATK GENOTYPEGVCFS
GATK HAPLOTYPECALLER
GATK SELECTVARIANTS
GATK VARIANTFILTRATION
GATK VARIANTRECALIBRATOR
HISAT2
JANNOVAR
LOFREQ
MINIMAP2
MULTIQC
NGS-DISAMBIGUATE
PICARD
PINDEL
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SICKLE
SNPEFF
SOURMASH
STAR
TRIM_GALORE
TRIMMOMATIC
TRINITY
VCF
VCFTOOLS
Snakemake Wrappers
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GATK
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GATK
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For gatk, the following wrappers are available:
GATK BASERECALIBRATOR
GATK COMBINEGVCFS
GATK GENOTYPEGVCFS
GATK HAPLOTYPECALLER
GATK SELECTVARIANTS
GATK VARIANTFILTRATION
GATK VARIANTRECALIBRATOR
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v: 0.31.0
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