Snakemake Wrappers
0.31.1
Wrappers
ART
BCFTOOLS
BOWTIE2
BUSCO
BWA
CUTADAPT
DELLY
EPIC
FASTQ_SCREEN
FASTQC
FGBIO
FREEBAYES
GATK
HISAT2
JANNOVAR
LOFREQ
MINIMAP2
MULTIQC
NGS-DISAMBIGUATE
PICARD
PICARD ADDORREPLACEREADGROUPS
PICARD COLLECTALIGNMENTSUMMARYMETRICS
PICARD COLLECTHSMETRICS
PICARD COLLECTINSERTSIZEMETRICS
PICARD CREATESEQUENCEDICTIONARY
PICARD MARKDUPLICATES
PICARD MERGESAMFILES
PICARD MERGEVCFS
PICARD REVERTSAM
PICARD SOMTOFASTQ
PICARD SORTSAM
PINDEL
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SICKLE
SNPEFF
SOURMASH
STAR
TRIM_GALORE
TRIMMOMATIC
TRINITY
VCF
VCFTOOLS
Snakemake Wrappers
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PICARD
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PICARD
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For picard, the following wrappers are available:
PICARD ADDORREPLACEREADGROUPS
PICARD COLLECTALIGNMENTSUMMARYMETRICS
PICARD COLLECTHSMETRICS
PICARD COLLECTINSERTSIZEMETRICS
PICARD CREATESEQUENCEDICTIONARY
PICARD MARKDUPLICATES
PICARD MERGESAMFILES
PICARD MERGEVCFS
PICARD REVERTSAM
PICARD SOMTOFASTQ
PICARD SORTSAM
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v: 0.31.1
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