Snakemake Wrappers
0.32.0
Wrappers
ART
BCFTOOLS
BOWTIE2
BUSCO
BWA
BWA ALN
BWA INDEX
BWA MEM
BWA SAMPE
BWA SAMSE
CLUSTALO
CUTADAPT
DELLY
EPIC
FASTQ_SCREEN
FASTQC
FGBIO
FREEBAYES
GATK
GATK3
HISAT2
JANNOVAR
LOFREQ
MINIMAP2
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
PICARD
PINDEL
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SICKLE
SNP-MUTATOR
SNPEFF
SOURMASH
STAR
TRIM_GALORE
TRIMMOMATIC
TRINITY
VCF
VCFTOOLS
Snakemake Wrappers
Docs
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BWA
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BWA
ΒΆ
For bwa, the following wrappers are available:
BWA ALN
BWA INDEX
BWA MEM
BWA SAMPE
BWA SAMSE