Snakemake Wrappers
0.32.0
Wrappers
ART
BCFTOOLS
BOWTIE2
BUSCO
BWA
CLUSTALO
CUTADAPT
DELLY
EPIC
FASTQ_SCREEN
FASTQC
FGBIO
FGBIO ANNOTATEBAMWITHUMIS
FGBIO CALLMOLECULARCONSENSUSREADS
FGBIO COLLECTDUPLEXSEQMETRICS
FGBIO GROUPREADSBYUMI
FGBIO SETMATEINFORMATION
FREEBAYES
GATK
GATK3
HISAT2
JANNOVAR
LOFREQ
MINIMAP2
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
PICARD
PINDEL
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SICKLE
SNP-MUTATOR
SNPEFF
SOURMASH
STAR
TRIM_GALORE
TRIMMOMATIC
TRINITY
VCF
VCFTOOLS
Snakemake Wrappers
Docs
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FGBIO
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FGBIO
ΒΆ
For fgbio, the following wrappers are available:
FGBIO ANNOTATEBAMWITHUMIS
FGBIO CALLMOLECULARCONSENSUSREADS
FGBIO COLLECTDUPLEXSEQMETRICS
FGBIO GROUPREADSBYUMI
FGBIO SETMATEINFORMATION