Snakemake Wrappers
0.32.0
Wrappers
ART
BCFTOOLS
BOWTIE2
BUSCO
BWA
CLUSTALO
CUTADAPT
DELLY
EPIC
FASTQ_SCREEN
FASTQC
FGBIO
FREEBAYES
GATK
GATK3
HISAT2
JANNOVAR
LOFREQ
MINIMAP2
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
PICARD
PINDEL
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SAMTOOLS BAM2FQ INTERLEAVED
SAMTOOLS BAM2FQ SEPARATE
SAMTOOLS FLAGSTAT
SAMTOOLS INDEX
SAMTOOLS MERGE
SAMTOOLS MPILEUP
SAMTOOLS SORT
SAMTOOLS STATS
SAMTOOLS VIEW
SICKLE
SNP-MUTATOR
SNPEFF
SOURMASH
STAR
TRIM_GALORE
TRIMMOMATIC
TRINITY
VCF
VCFTOOLS
Snakemake Wrappers
Docs
»
SAMTOOLS
Edit on Bitbucket
SAMTOOLS
ΒΆ
For samtools, the following wrappers are available:
SAMTOOLS BAM2FQ INTERLEAVED
SAMTOOLS BAM2FQ SEPARATE
SAMTOOLS FLAGSTAT
SAMTOOLS INDEX
SAMTOOLS MERGE
SAMTOOLS MPILEUP
SAMTOOLS SORT
SAMTOOLS STATS
SAMTOOLS VIEW