Snakemake Wrappers
0.34.0
Wrappers
ART
BCFTOOLS
BOWTIE2
BUSCO
BWA
CLUSTALO
CUTADAPT
DELLY
EPIC
FASTP
FASTQ_SCREEN
FASTQC
FGBIO
FREEBAYES
GATK
GATK3
HISAT2
JANNOVAR
LOFREQ
MINIMAP2
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
PICARD
PINDEL
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SAMTOOLS BAM2FQ INTERLEAVED
SAMTOOLS BAM2FQ SEPARATE
SAMTOOLS FLAGSTAT
SAMTOOLS INDEX
SAMTOOLS MERGE
SAMTOOLS MPILEUP
SAMTOOLS SORT
SAMTOOLS STATS
SAMTOOLS VIEW
SICKLE
SNP-MUTATOR
SNPEFF
SOURMASH
STAR
TRIM_GALORE
TRIMMOMATIC
TRINITY
VCF
VCFTOOLS
Snakemake Wrappers
Docs
»
SAMTOOLS
Edit on Bitbucket
SAMTOOLS
ΒΆ
For samtools, the following wrappers are available:
SAMTOOLS BAM2FQ INTERLEAVED
SAMTOOLS BAM2FQ SEPARATE
SAMTOOLS FLAGSTAT
SAMTOOLS INDEX
SAMTOOLS MERGE
SAMTOOLS MPILEUP
SAMTOOLS SORT
SAMTOOLS STATS
SAMTOOLS VIEW
Read the Docs
v: 0.34.0
Versions
latest
stable
0.34.0
0.33.0
0.32.0
0.31.1
0.31.0
0.30.0
0.29.0
0.28.0
0.27.1
0.27.0
0.26.1
0.26.0
0.25.0
0.24.0
0.23.1
0.23.0
0.22.0
0.21.0
0.20.1
0.20.0
0.19.4
0.19.3
0.19.2
0.19.1
0.19.0
0.18.0
0.17.4
0.17.3
0.17.2
0.17.1
0.17.0
0.16.0
0.15.4
0.15.3
0.15.1
0.15.0
0.14.2
0.14.1
0.14.0
0.13.2
0.13.1
0.13.0
0.12.0
0.11.0
0.10.0
0.9.0
0.8.0
0.7.0
0.6.0
0.5.0
0.4.0
0.3.0
0.2.0
0.1.0
v0.0.13
0.0.13
0.0.12
0.0.11
0.0.10
0.0.9
0.0.8
0.0.7
0.0.6
0.0.5
0.0.4
0.0.3
0.0.2
0.0.1
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.