Snakemake Wrappers
0.34.0
Wrappers
ART
BCFTOOLS
BOWTIE2
BUSCO
BWA
CLUSTALO
CUTADAPT
DELLY
EPIC
FASTP
FASTQ_SCREEN
FASTQC
FGBIO
FREEBAYES
GATK
GATK3
HISAT2
JANNOVAR
LOFREQ
MINIMAP2
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
PICARD
PINDEL
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SICKLE
SNP-MUTATOR
SNPEFF
SOURMASH
STAR
TRIM_GALORE
TRIM_GALORE-PE
TRIM_GALORE-SE
TRIMMOMATIC
TRINITY
VCF
VCFTOOLS
Snakemake Wrappers
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TRIM_GALORE
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TRIM_GALORE
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For trim_galore, the following wrappers are available:
TRIM_GALORE-PE
TRIM_GALORE-SE
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v: 0.34.0
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