Snakemake Wrappers
0.36.0
Wrappers
ART
BCFTOOLS
BOWTIE2
BUSCO
BWA
CLUSTALO
CUTADAPT
DELLY
EPIC
FASTP
FASTQ_SCREEN
FASTQC
FGBIO
FREEBAYES
GATK
GATK3
HISAT2
IGV-REPORTS
JANNOVAR
KALLISTO
LOFREQ
MINIMAP2
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
PICARD
PICARD ADDORREPLACEREADGROUPS
PICARD COLLECTALIGNMENTSUMMARYMETRICS
PICARD COLLECTHSMETRICS
PICARD COLLECTINSERTSIZEMETRICS
PICARD CREATESEQUENCEDICTIONARY
PICARD MARKDUPLICATES
PICARD MERGESAMFILES
PICARD MERGEVCFS
PICARD REVERTSAM
PICARD SOMTOFASTQ
PICARD SORTSAM
PINDEL
PYFASTAQ
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SICKLE
SNP-MUTATOR
SNPEFF
SOURMASH
STAR
STRELKA
TRIM_GALORE
TRIMMOMATIC
TRINITY
VCF
VCFTOOLS
Snakemake Wrappers
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PICARD
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PICARD
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For picard, the following wrappers are available:
PICARD ADDORREPLACEREADGROUPS
PICARD COLLECTALIGNMENTSUMMARYMETRICS
PICARD COLLECTHSMETRICS
PICARD COLLECTINSERTSIZEMETRICS
PICARD CREATESEQUENCEDICTIONARY
PICARD MARKDUPLICATES
PICARD MERGESAMFILES
PICARD MERGEVCFS
PICARD REVERTSAM
PICARD SOMTOFASTQ
PICARD SORTSAM
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v: 0.36.0
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