Snakemake Wrappers
0.39.0
Wrappers
ART
BCFTOOLS
BOWTIE2
BUSCO
BWA
CLUSTALO
CUTADAPT
DELLY
EPIC
FASTP
FASTQ_SCREEN
FASTQC
FGBIO
FILTLONG
FREEBAYES
GATK
GATK3
HISAT2
IGV-REPORTS
JANNOVAR
KALLISTO
LOFREQ
MINIMAP2
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
PICARD
PINDEL
PYFASTAQ
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SICKLE
SNP-MUTATOR
SNPEFF
SOURMASH
STAR
STRELKA
TRIM_GALORE
TRIMMOMATIC
TRINITY
UMIS
VARSCAN
VARSCAN MPILEUP2INDEL
VARSCAN MPILEUP2SNP
VARSCAN SOMATIC
VCF
VCFTOOLS
Snakemake Wrappers
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VARSCAN
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VARSCAN
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For varscan, the following wrappers are available:
VARSCAN MPILEUP2INDEL
VARSCAN MPILEUP2SNP
VARSCAN SOMATIC
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v: 0.39.0
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