Snakemake Wrappers
0.40.0
Wrappers
ART
BCFTOOLS
BEDTOOLS
BOWTIE2
BUSCO
BWA
CLUSTALO
CUTADAPT
DELLY
EPIC
FASTP
FASTQ_SCREEN
FASTQC
FGBIO
FILTLONG
FREEBAYES
GATK
GATK3
HISAT2
IGV-REPORTS
JANNOVAR
KALLISTO
LOFREQ
MINIMAP2
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
PICARD
PINDEL
PYFASTAQ
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SAMTOOLS BAM2FQ INTERLEAVED
SAMTOOLS BAM2FQ SEPARATE
SAMTOOLS FAIDX
SAMTOOLS FIXMATE
SAMTOOLS FLAGSTAT
SAMTOOLS INDEX
SAMTOOLS MERGE
SAMTOOLS MPILEUP
SAMTOOLS SORT
SAMTOOLS STATS
SAMTOOLS VIEW
SICKLE
SNP-MUTATOR
SNPEFF
SOURMASH
STAR
STRELKA
TRIM_GALORE
TRIMMOMATIC
TRINITY
UMIS
VARSCAN
VCF
VCFTOOLS
Snakemake Wrappers
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SAMTOOLS
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SAMTOOLS
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For samtools, the following wrappers are available:
SAMTOOLS BAM2FQ INTERLEAVED
SAMTOOLS BAM2FQ SEPARATE
SAMTOOLS FAIDX
SAMTOOLS FIXMATE
SAMTOOLS FLAGSTAT
SAMTOOLS INDEX
SAMTOOLS MERGE
SAMTOOLS MPILEUP
SAMTOOLS SORT
SAMTOOLS STATS
SAMTOOLS VIEW
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v: 0.40.0
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