Snakemake Wrappers
0.40.2

Wrappers

  • ART
  • BCFTOOLS
  • BEDTOOLS
  • BOWTIE2
  • BUSCO
  • BWA
  • CLUSTALO
  • CUTADAPT
  • DELLY
  • EPIC
  • FASTP
  • FASTQ_SCREEN
  • FASTQC
  • FGBIO
  • FILTLONG
  • FREEBAYES
  • GATK
  • GATK3
  • HISAT2
  • IGV-REPORTS
  • JANNOVAR
  • KALLISTO
  • LOFREQ
  • MINIMAP2
  • MULTIQC
  • NANOSIM-H
  • NGS-DISAMBIGUATE
  • PICARD
    • PICARD ADDORREPLACEREADGROUPS
    • PICARD COLLECTALIGNMENTSUMMARYMETRICS
    • PICARD COLLECTHSMETRICS
    • PICARD COLLECTINSERTSIZEMETRICS
    • PICARD CREATESEQUENCEDICTIONARY
    • PICARD MARKDUPLICATES
    • PICARD MERGESAMFILES
    • PICARD MERGEVCFS
    • PICARD REVERTSAM
    • PICARD SOMTOFASTQ
    • PICARD SORTSAM
  • PINDEL
  • PYFASTAQ
  • RUBIC
  • SALMON
  • SAMBAMBA
  • SAMTOOLS
  • SICKLE
  • SNP-MUTATOR
  • SNPEFF
  • SOURMASH
  • STAR
  • STRELKA
  • TRIM_GALORE
  • TRIMMOMATIC
  • TRINITY
  • UMIS
  • VARSCAN
  • VCF
  • VCFTOOLS
Snakemake Wrappers
  • Docs »
  • PICARD
  • Edit on GitHub

PICARDΒΆ

For picard, the following wrappers are available:

  • PICARD ADDORREPLACEREADGROUPS
  • PICARD COLLECTALIGNMENTSUMMARYMETRICS
  • PICARD COLLECTHSMETRICS
  • PICARD COLLECTINSERTSIZEMETRICS
  • PICARD CREATESEQUENCEDICTIONARY
  • PICARD MARKDUPLICATES
  • PICARD MERGESAMFILES
  • PICARD MERGEVCFS
  • PICARD REVERTSAM
  • PICARD SOMTOFASTQ
  • PICARD SORTSAM
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