Snakemake Wrappers
0.60.0
Wrappers
ARRIBA
ART
BAMTOOLS
BCFTOOLS
BEDTOOLS
BISMARK
BOWTIE2
BUSCO
BWA
CAIROSVG
CLUSTALO
CUTADAPT
DELLY
EPIC
FASTP
FASTQ_SCREEN
FASTQC
FGBIO
FILTLONG
FREEBAYES
GATK
GATK3
GDC-API
GDC-CLIENT
HAP.PY
HISAT2
HMMER
HOMER
IGV-REPORTS
INFERNAL
JANNOVAR
KALLISTO
LAST
LOFREQ
MINIMAP2
MSISENSOR
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
PALADIN
PEAR
PICARD
PINDEL
PLASS
PRIMERCLIP
PROSOLO
PTRIMMER
PYFASTAQ
REFERENCE
REFGENIE
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SAMTOOLS BAM2FQ INTERLEAVED
SAMTOOLS BAM2FQ SEPARATE
SAMTOOLS DEPTH
SAMTOOLS FAIDX
SAMTOOLS FIXMATE
SAMTOOLS FLAGSTAT
SAMTOOLS IDXSTATS
SAMTOOLS INDEX
SAMTOOLS MERGE
SAMTOOLS MPILEUP
SAMTOOLS SORT
SAMTOOLS STATS
SAMTOOLS VIEW
SEQTK
SICKLE
SNP-MUTATOR
SNPEFF
SNPSIFT
SOURMASH
SRA-TOOLS
STAR
STRELKA
TABIX
TRANSDECODER
TRIM_GALORE
TRIMMOMATIC
TRINITY
TXIMPORT
UCSC
UMIS
VARSCAN
VCFTOOLS
VEP
Snakemake Wrappers
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SAMTOOLS
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SAMTOOLS
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For samtools, the following wrappers are available:
SAMTOOLS BAM2FQ INTERLEAVED
SAMTOOLS BAM2FQ SEPARATE
SAMTOOLS DEPTH
SAMTOOLS FAIDX
SAMTOOLS FIXMATE
SAMTOOLS FLAGSTAT
SAMTOOLS IDXSTATS
SAMTOOLS INDEX
SAMTOOLS MERGE
SAMTOOLS MPILEUP
SAMTOOLS SORT
SAMTOOLS STATS
SAMTOOLS VIEW
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v: 0.60.0
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