Snakemake Wrappers
0.68.0
Wrappers and Meta-Wrappers
Wrappers
ADAPTERREMOVAL
ARRIBA
ART
BAMTOOLS
BCFTOOLS
BEDTOOLS
BENCHMARK
BISMARK
BOWTIE2
BUSCO
BWA
BWA-MEM2
CAIROSVG
CLUSTALO
CUTADAPT
DADA2
DEEPTOOLS
DEEPVARIANT
DELLY
EPIC
FASTP
FASTQ_SCREEN
FASTQC
FGBIO
FILTLONG
FREEBAYES
GATK
GATK3
GDC-API
GDC-CLIENT
GENOMEPY
GRIDSS
HAP.PY
HISAT2
HMMER
HOMER
IGV-REPORTS
INFERNAL
JANNOVAR
KALLISTO
LAST
LOFREQ
MACS2
MAPDAMAGE2
MINIMAP2
MSISENSOR
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
OPTITYPE
PALADIN
PBMM2
PEAR
PICARD
PINDEL
PLASS
PRESEQ
PRIMERCLIP
PROSOLO
PTRIMMER
PYFASTAQ
RASUSA
RAZERS3
REBALER
REFERENCE
REFGENIE
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SAMTOOLS BAM2FQ INTERLEAVED
SAMTOOLS BAM2FQ SEPARATE
SAMTOOLS CALMD
SAMTOOLS DEPTH
SAMTOOLS FAIDX
SAMTOOLS FIXMATE
SAMTOOLS FLAGSTAT
SAMTOOLS IDXSTATS
SAMTOOLS INDEX
SAMTOOLS MERGE
SAMTOOLS MPILEUP
SAMTOOLS SORT
SAMTOOLS STATS
SAMTOOLS VIEW
SEQTK
SHOVILL
SICKLE
SNP-MUTATOR
SNPEFF
SNPSIFT
SOURMASH
SRA-TOOLS
STAR
STRELKA
STRLING
TABIX
TRANSDECODER
TRIM_GALORE
TRIMMOMATIC
TRINITY
TXIMPORT
UCSC
UMIS
UNICYCLER
VARSCAN
VCFTOOLS
VEMBRANE
VEP
VG
WGSIM
Meta-Wrappers
Snakemake Wrappers
Docs
»
Wrappers
»
SAMTOOLS
Edit on GitHub
SAMTOOLS
ΒΆ
For samtools, the following wrappers are available:
SAMTOOLS BAM2FQ INTERLEAVED
SAMTOOLS BAM2FQ SEPARATE
SAMTOOLS CALMD
SAMTOOLS DEPTH
SAMTOOLS FAIDX
SAMTOOLS FIXMATE
SAMTOOLS FLAGSTAT
SAMTOOLS IDXSTATS
SAMTOOLS INDEX
SAMTOOLS MERGE
SAMTOOLS MPILEUP
SAMTOOLS SORT
SAMTOOLS STATS
SAMTOOLS VIEW
Read the Docs
v: 0.68.0
Versions
latest
stable
0.68.0
0.67.0
0.66.0
0.65.0
0.64.0
0.63.0
0.62.0
0.61.0
0.60.1
0.60.0
0.59.2
0.59.1
0.59.0
0.58.0
0.57.0
0.56.0
0.55.1
0.55.0
0.54.0
0.53.0
0.52.0
0.51.3
0.51.2
0.51.1
0.51.0
0.50.4
0.50.3
0.50.2
0.50.1
0.50.0
0.49.0
0.48.0
0.47.0
0.46.0
0.45.1
0.40.2
0.40.1
0.40.0
0.39.0
0.38.1
0.38.0
0.37.1
0.37.0
0.36.0
0.35.2
0.35.1
0.35.0
0.34.0
0.33.0
0.32.0
0.31.1
0.31.0
0.30.0
0.29.0
0.28.0
0.27.1
0.27.0
0.26.1
0.26.0
0.25.0
0.24.0
0.23.1
0.23.0
0.22.0
0.21.0
0.20.1
0.20.0
0.19.4
0.19.3
0.19.2
0.19.1
0.19.0
0.18.0
0.17.4
0.17.3
0.17.2
0.17.1
0.17.0
0.16.0
0.15.4
0.15.3
0.15.1
0.15.0
0.14.2
0.14.1
0.14.0
0.13.2
0.13.1
0.13.0
0.12.0
0.11.0
0.10.0
0.9.0
0.8.0
0.7.0
0.6.0
0.5.0
0.4.0
0.3.0
0.2.0
0.1.0
v0.0.13
0.0.13
0.0.12
0.0.11
0.0.10
0.0.9
0.0.8
0.0.7
0.0.6
0.0.5
0.0.4
0.0.3
0.0.2
0.0.1
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.