Snakemake Wrappers

0.71.1

Wrappers and Meta-Wrappers

Wrappers
- ADAPTERREMOVAL
- ARRIBA
- ART
- BAMTOOLS
- BCFTOOLS
- BEDTOOLS
- BENCHMARK
- BISMARK
- BOWTIE2
- BUSCO
- BWA
- BWA-MEM2
- CAIROSVG
- CLUSTALO
- CUTADAPT
- DADA2
- DEEPTOOLS
- DEEPVARIANT
- DELLY
- DIAMOND
- EPIC
- FASTP
- FASTQ_SCREEN
- FASTQC
- FGBIO
- FILTLONG
- FREEBAYES
- GATK
- GATK3
- GDC-API
- GDC-CLIENT
- GENOMEPY
- GRIDSS
- HAP.PY
- HISAT2
- HMMER
- HOMER
- IGV-REPORTS
- INFERNAL
- JANNOVAR
- KALLISTO
- LAST
- LOFREQ
- MACS2
- MAPDAMAGE2
- MINIMAP2
- MSISENSOR
- MULTIQC
- NANOSIM-H
- NGS-DISAMBIGUATE
- OPEN-CRAVAT
- OPTITYPE
- PALADIN
- PBMM2
- PEAR
- PICARD
- PINDEL
- PLASS
- PRESEQ
- PRIMERCLIP
- PROSOLO
- PTRIMMER
- PYFASTAQ
- RASUSA
- RAZERS3
- REBALER
- REFERENCE
- REFGENIE
- RUBIC
- SALMON
- SAMBAMBA
- SAMTOOLS
- SEQTK
- SHOVILL
- SICKLE
- SNP-MUTATOR
- SNPEFF
- SNPSIFT
- SOURMASH
- SRA-TOOLS
- STAR
- STRELKA
- STRLING
- SUBREAD
- TABIX
- TRANSDECODER
- TRIM_GALORE
- TRIMMOMATIC
- TRINITY
- TXIMPORT
- UCSC
- UMIS
- UNICYCLER
- VARDICT
- VARSCAN
- VCFTOOLS
- VEMBRANE
- VEP
- VG
- WGSIM
Meta-Wrappers

Snakemake Wrappers

Docs »
Wrappers »
UCSC
Edit on GitHub

UCSC¶

For ucsc, the following wrappers are available:

BEDGRAPHTOBIGWIG
FATOTWOBIT
TWOBITINFO
TWOBITTOFA

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