Snakemake Wrappers
0.73.0
Wrappers and Meta-Wrappers
Wrappers
ADAPTERREMOVAL
ARRIBA
ART
BAMTOOLS
BCFTOOLS
BEDTOOLS
BENCHMARK
BISMARK
BOWTIE2
BUSCO
BWA
BWA-MEM2
CAIROSVG
CLUSTALO
CUTADAPT
DADA2
DEEPTOOLS
DEEPVARIANT
DELLY
DIAMOND
EPIC
FASTP
FASTQ_SCREEN
FASTQC
FGBIO
FILTLONG
FREEBAYES
GATK
GATK3
GDC-API
GDC-CLIENT
GENOMEPY
GRIDSS
HAP.PY
HISAT2
HMMER
HOMER
IGV-REPORTS
INFERNAL
JANNOVAR
KALLISTO
LAST
LOFREQ
MACS2
MAPDAMAGE2
MINIMAP2
MSISENSOR
MULTIQC
NANOSIM-H
NGS-DISAMBIGUATE
OPEN-CRAVAT
OPTITYPE
PALADIN
PBMM2
PEAR
PICARD
PINDEL
PLASS
PRESEQ
PRIMERCLIP
PROSOLO
PTRIMMER
PYFASTAQ
RASUSA
RAZERS3
REBALER
REFERENCE
REFGENIE
RUBIC
SALMON
SAMBAMBA
SAMBAMBA FLAGSTAT
SAMBAMBA INDEX
SAMBAMBA MARKDUP
SAMBAMBA MERGE
SAMBAMBA SLICE
SAMBAMBA SORT
SAMBAMBA VIEW
SAMTOOLS
SEQTK
SHOVILL
SICKLE
SNP-MUTATOR
SNPEFF
SNPSIFT
SOURMASH
SRA-TOOLS
STAR
STRELKA
STRLING
SUBREAD
TABIX
TRANSDECODER
TRIM_GALORE
TRIMMOMATIC
TRINITY
TXIMPORT
UCSC
UMIS
UNICYCLER
VARDICT
VARSCAN
VCFTOOLS
VEMBRANE
VEP
VG
WGSIM
Meta-Wrappers
Snakemake Wrappers
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Wrappers
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SAMBAMBA
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SAMBAMBA
ΒΆ
For sambamba, the following wrappers are available:
SAMBAMBA FLAGSTAT
SAMBAMBA INDEX
SAMBAMBA MARKDUP
SAMBAMBA MERGE
SAMBAMBA SLICE
SAMBAMBA SORT
SAMBAMBA VIEW
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v: 0.73.0
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