Snakemake Wrappers
v1.2.0
Wrappers and Meta-Wrappers
Wrappers
ADAPTERREMOVAL
ARRIBA
ART
ASSEMBLY-STATS
BAMTOOLS
BBTOOLS
BCFTOOLS
BEDTOOLS
BENCHMARK
BGZIP
BIOBAMBAM2
BISMARK
BLAST
BOWTIE2
BUSCO
BWA
BWA-MEM2
CAIROSVG
CLUSTALO
CUTADAPT
DADA2
DEEPTOOLS
DEEPVARIANT
DELLY
DIAMOND
EPIC
FASTP
FASTQ_SCREEN
FASTQC
FASTTREE
FGBIO
FILTLONG
FREEBAYES
GATK
GATK3
GDC-API
GDC-CLIENT
GENOMEPY
GRIDSS
HAP.PY
HISAT2
HMMER
HOMER
IGV-REPORTS
INFERNAL
JANNOVAR
JELLYFISH
KALLISTO
KALLISTO INDEX
KALLISTO QUANT
LAST
LIFTOFF
LOFREQ
MACS2
MANTA
MAPDAMAGE2
MICROPHASER
MINIMAP2
MLST
MOSDEPTH
MSISENSOR
MULTIQC
MUSCLE
NANOSIM-H
NEXTFLOW
NGS-DISAMBIGUATE
OPEN-CRAVAT
OPTITYPE
PALADIN
PANDORA
PBMM2
PEAR
PICARD
PINDEL
PLASS
PRESEQ
PRIMERCLIP
PROSOLO
PTRIMMER
PYFASTAQ
QUALIMAP
RASUSA
RAZERS3
RBT
REBALER
REFERENCE
REFGENIE
RSEM
RUBIC
SALMON
SAMBAMBA
SAMTOOLS
SEQTK
SHOVILL
SICKLE
SNP-MUTATOR
SNPEFF
SNPSIFT
SOURMASH
SPADES
SRA-TOOLS
STAR
STRELKA
STRLING
SUBREAD
TABIX
TRANSDECODER
TRIM_GALORE
TRIMMOMATIC
TRINITY
TXIMPORT
UCSC
UMIS
UNICYCLER
VARDICT
VARSCAN
VCFTOOLS
VEMBRANE
VEP
VERIFYBAMID
VG
WGSIM
Meta-Wrappers
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Snakemake Wrappers
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Wrappers
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KALLISTO
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KALLISTO
ΒΆ
For kallisto, the following wrappers are available:
KALLISTO INDEX
KALLISTO QUANT
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v: v1.2.0
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