Snakemake Wrappers
v1.9.0

Wrappers and Meta-Wrappers

  • Wrappers
    • ADAPTERREMOVAL
    • ARRIBA
    • ART
    • ASSEMBLY-STATS
    • BAMTOOLS
    • BBTOOLS
    • BCFTOOLS
    • BEDTOOLS
    • BELLEROPHON
    • BENCHMARK
    • BGZIP
    • BIOBAMBAM2
    • BISMARK
    • BLAST
    • BOWTIE2
    • BUSCO
    • BUSTOOLS
    • BWA
    • BWA-MEM2
    • CAIROSVG
    • CLUSTALO
    • COOLTOOLS
      • COOLTOOLS DOTS
      • COOLTOOLS EIGS_CIS
      • COOLTOOLS EIGS_TRANS
      • COOLTOOLS EXPECTED_CIS
      • COOLTOOLS EXPECTED_TRANS
      • COOLTOOLS GENOME_BINNIFY
      • COOLTOOLS GENOME_GC
      • COOLTOOLS INSULATION
      • COOLTOOLS PILEUP
      • COOLTOOLS SADDLE
    • CUTADAPT
    • DADA2
    • DATAVZRD
    • DEEPTOOLS
    • DEEPVARIANT
    • DELLY
    • DIAMOND
    • DRAGMAP
    • EPIC
    • FASTP
    • FASTQ_SCREEN
    • FASTQC
    • FASTTREE
    • FGBIO
    • FILTLONG
    • FREEBAYES
    • GATK
    • GATK3
    • GDC-API
    • GDC-CLIENT
    • GENOMEPY
    • GENOMESCOPE
    • GFATOOLS
    • GRIDSS
    • HAP.PY
    • HIFIASM
    • HISAT2
    • HMMER
    • HOMER
    • IGV-REPORTS
    • INFERNAL
    • JANNOVAR
    • JELLYFISH
    • KALLISTO
    • LAST
    • LIFTOFF
    • LOFREQ
    • MACS2
    • MANTA
    • MAPDAMAGE2
    • MASHMAP
    • MERYL
    • MICROPHASER
    • MINIMAP2
    • MLST
    • MOSDEPTH
    • MSISENSOR
    • MULTIQC
    • MUSCLE
    • NANOSIM-H
    • NEXTFLOW
    • NGS-DISAMBIGUATE
    • OPEN-CRAVAT
    • OPTITYPE
    • PALADIN
    • PANDORA
    • PBMM2
    • PEAR
    • PICARD
    • PINDEL
    • PLASS
    • PRESEQ
    • PRETEXT
    • PRIMERCLIP
    • PROSOLO
    • PTRIMMER
    • PURGE_DUPS
    • PYFASTAQ
    • QUALIMAP
    • QUAST
    • RASUSA
    • RAZERS3
    • RBT
    • REBALER
    • REFERENCE
    • REFGENIE
    • RSEM
    • RUBIC
    • SALMON
    • SALSA2
    • SAMBAMBA
    • SAMTOOLS
    • SEQTK
    • SHOVILL
    • SICKLE
    • SNP-MUTATOR
    • SNPEFF
    • SNPSIFT
    • SOURMASH
    • SPADES
    • SRA-TOOLS
    • STAR
    • STRELKA
    • STRLING
    • SUBREAD
    • TABIX
    • TRANSDECODER
    • TRIM_GALORE
    • TRIMMOMATIC
    • TRINITY
    • TXIMPORT
    • UCSC
    • UMIS
    • UNICYCLER
    • VARDICT
    • VARSCAN
    • VCFTOOLS
    • VEMBRANE
    • VEP
    • VERIFYBAMID
    • VG
    • WGSIM
  • Meta-Wrappers

Development

  • Contributing
Snakemake Wrappers
  • Docs »
  • Wrappers »
  • COOLTOOLS
  • Edit on GitHub

COOLTOOLSΒΆ

For cooltools, the following wrappers are available:

  • COOLTOOLS DOTS
  • COOLTOOLS EIGS_CIS
  • COOLTOOLS EIGS_TRANS
  • COOLTOOLS EXPECTED_CIS
  • COOLTOOLS EXPECTED_TRANS
  • COOLTOOLS GENOME_BINNIFY
  • COOLTOOLS GENOME_GC
  • COOLTOOLS INSULATION
  • COOLTOOLS PILEUP
  • COOLTOOLS SADDLE
Next Previous

© Copyright 2016, The Snakemake team Revision 2eb68436.

Built with Sphinx using a theme provided by Read the Docs.
Read the Docs v: v1.9.0
Versions
latest
stable
v1.9.0
v1.8.0
v1.7.2
v1.7.1
v1.7.0
v1.6.0
v1.5.0
v1.4.0
v1.3.2
v1.3.1
v1.3.0
v1.2.1
v1.2.0
v1.1.0
v1.0.0
v0.87.0
v0.86.0
v0.85.1
0.85.0
0.84.0
0.80.2
v0.80.1
0.80.1
0.80.0
0.79.0
0.78.0
0.77.0
0.76.0
v0.75.0
0.75.0
0.74.0
0.73.0
0.72.0
0.71.1
0.71.0
0.70.0
v0.69.0
0.69.0
0.68.0
0.67.0
0.66.0
0.65.0
0.64.0
0.63.0
0.62.0
0.61.0
0.60.1
0.60.0
0.59.2
0.59.1
0.59.0
0.58.0
0.57.0
0.56.0
0.55.1
0.55.0
0.54.0
0.53.0
0.52.0
0.51.3
0.51.2
0.51.1
0.51.0
0.50.4
0.50.3
0.50.2
0.50.1
0.50.0
0.49.0
0.48.0
0.47.0
0.46.0
0.45.1
0.40.2
0.40.1
0.40.0
0.39.0
0.38.1
0.38.0
0.37.1
0.37.0
0.36.0
0.35.2
0.35.1
0.35.0
0.34.0
0.33.0
0.32.0
0.31.1
0.31.0
0.30.0
0.29.0
0.28.0
0.27.1
0.27.0
0.26.1
0.26.0
0.25.0
0.24.0
0.23.1
0.23.0
0.22.0
0.21.0
0.20.1
0.20.0
0.19.4
0.19.3
0.19.2
0.19.1
0.19.0
0.18.0
0.17.4
0.17.3
0.17.2
0.17.1
0.17.0
0.16.0
0.15.4
0.15.3
0.15.1
0.15.0
0.14.2
0.14.1
0.14.0
0.13.2
0.13.1
0.13.0
0.12.0
0.11.0
0.10.0
0.9.0
0.8.0
0.7.0
0.6.0
0.5.0
0.4.0
0.3.0
0.2.0
0.1.0
v0.0.13
0.0.13
0.0.12
0.0.11
0.0.10
0.0.9
0.0.8
0.0.7
0.0.6
0.0.5
0.0.4
0.0.3
0.0.2
0.0.1
Downloads
On Read the Docs
Project Home
Builds

Free document hosting provided by Read the Docs.