Snakemake Wrappers
0.67.0

Wrappers

  • ARRIBA
  • ART
  • BAMTOOLS
  • BCFTOOLS
    • BCFTOOLS CALL
    • BCFTOOLS CONCAT
    • BCFTOOLS INDEX
    • BCFTOOLS MERGE
    • BCFTOOLS MPILEUP
    • BCFTOOLS NORM
    • BCFTOOLS REHEADER
    • BCFTOOLS VIEW
  • BEDTOOLS
  • BENCHMARK
  • BISMARK
  • BOWTIE2
  • BUSCO
  • BWA
  • BWA-MEM2
  • CAIROSVG
  • CLUSTALO
  • CUTADAPT
  • DEEPTOOLS
  • DEEPVARIANT
  • DELLY
  • EPIC
  • FASTP
  • FASTQ_SCREEN
  • FASTQC
  • FGBIO
  • FILTLONG
  • FREEBAYES
  • GATK
  • GATK3
  • GDC-API
  • GDC-CLIENT
  • GENOMEPY
  • GRIDSS
  • HAP.PY
  • HISAT2
  • HMMER
  • HOMER
  • IGV-REPORTS
  • INFERNAL
  • JANNOVAR
  • KALLISTO
  • LAST
  • LOFREQ
  • MACS2
  • MINIMAP2
  • MSISENSOR
  • MULTIQC
  • NANOSIM-H
  • NGS-DISAMBIGUATE
  • OPTITYPE
  • PALADIN
  • PEAR
  • PICARD
  • PINDEL
  • PLASS
  • PRESEQ
  • PRIMERCLIP
  • PROSOLO
  • PTRIMMER
  • PYFASTAQ
  • RAZERS3
  • REFERENCE
  • REFGENIE
  • RUBIC
  • SALMON
  • SAMBAMBA
  • SAMTOOLS
  • SEQTK
  • SHOVILL
  • SICKLE
  • SNP-MUTATOR
  • SNPEFF
  • SNPSIFT
  • SOURMASH
  • SRA-TOOLS
  • STAR
  • STRELKA
  • STRLING
  • TABIX
  • TRANSDECODER
  • TRIM_GALORE
  • TRIMMOMATIC
  • TRINITY
  • TXIMPORT
  • UCSC
  • UMIS
  • VARSCAN
  • VCFTOOLS
  • VEMBRANE
  • VEP

Meta-Wrappers

  • BWA_MAPPING
  • STAR-ARRIBA
Snakemake Wrappers
  • Docs »
  • BCFTOOLS
  • Edit on GitHub

BCFTOOLSΒΆ

For bcftools, the following wrappers are available:

  • BCFTOOLS CALL
  • BCFTOOLS CONCAT
  • BCFTOOLS INDEX
  • BCFTOOLS MERGE
  • BCFTOOLS MPILEUP
  • BCFTOOLS NORM
  • BCFTOOLS REHEADER
  • BCFTOOLS VIEW
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