Snakemake Wrappers
0.67.0

Wrappers

  • ARRIBA
  • ART
  • BAMTOOLS
  • BCFTOOLS
  • BEDTOOLS
  • BENCHMARK
  • BISMARK
  • BOWTIE2
  • BUSCO
  • BWA
  • BWA-MEM2
  • CAIROSVG
  • CLUSTALO
  • CUTADAPT
  • DEEPTOOLS
  • DEEPVARIANT
  • DELLY
  • EPIC
  • FASTP
  • FASTQ_SCREEN
  • FASTQC
  • FGBIO
  • FILTLONG
  • FREEBAYES
  • GATK
  • GATK3
  • GDC-API
  • GDC-CLIENT
  • GENOMEPY
  • GRIDSS
  • HAP.PY
  • HISAT2
  • HMMER
  • HOMER
  • IGV-REPORTS
  • INFERNAL
  • JANNOVAR
  • KALLISTO
  • LAST
  • LOFREQ
  • MACS2
  • MINIMAP2
  • MSISENSOR
  • MULTIQC
  • NANOSIM-H
  • NGS-DISAMBIGUATE
  • OPTITYPE
  • PALADIN
  • PEAR
  • PICARD
    • PICARD ADDORREPLACEREADGROUPS
    • PICARD BEDTOINTERVALLIST
    • PICARD COLLECTALIGNMENTSUMMARYMETRICS
    • PICARD COLLECTHSMETRICS
    • PICARD COLLECTINSERTSIZEMETRICS
    • PICARD COLLECTMULTIPLEMETRICS
    • PICARD COLLECTTARGETEDPCRMETRICS
    • PICARD CREATESEQUENCEDICTIONARY
    • PICARD MARKDUPLICATES
    • PICARD MERGESAMFILES
    • PICARD MERGEVCFS
    • PICARD REVERTSAM
    • PICARD SOMTOFASTQ
    • PICARD SORTSAM
  • PINDEL
  • PLASS
  • PRESEQ
  • PRIMERCLIP
  • PROSOLO
  • PTRIMMER
  • PYFASTAQ
  • RAZERS3
  • REFERENCE
  • REFGENIE
  • RUBIC
  • SALMON
  • SAMBAMBA
  • SAMTOOLS
  • SEQTK
  • SHOVILL
  • SICKLE
  • SNP-MUTATOR
  • SNPEFF
  • SNPSIFT
  • SOURMASH
  • SRA-TOOLS
  • STAR
  • STRELKA
  • STRLING
  • TABIX
  • TRANSDECODER
  • TRIM_GALORE
  • TRIMMOMATIC
  • TRINITY
  • TXIMPORT
  • UCSC
  • UMIS
  • VARSCAN
  • VCFTOOLS
  • VEMBRANE
  • VEP

Meta-Wrappers

  • BWA_MAPPING
  • STAR-ARRIBA
Snakemake Wrappers
  • Docs »
  • PICARD
  • Edit on GitHub

PICARDΒΆ

For picard, the following wrappers are available:

  • PICARD ADDORREPLACEREADGROUPS
  • PICARD BEDTOINTERVALLIST
  • PICARD COLLECTALIGNMENTSUMMARYMETRICS
  • PICARD COLLECTHSMETRICS
  • PICARD COLLECTINSERTSIZEMETRICS
  • PICARD COLLECTMULTIPLEMETRICS
  • PICARD COLLECTTARGETEDPCRMETRICS
  • PICARD CREATESEQUENCEDICTIONARY
  • PICARD MARKDUPLICATES
  • PICARD MERGESAMFILES
  • PICARD MERGEVCFS
  • PICARD REVERTSAM
  • PICARD SOMTOFASTQ
  • PICARD SORTSAM
Next Previous

© Copyright 2016, The Snakemake team Revision 2ba693d6.

Built with Sphinx using a theme provided by Read the Docs.
Read the Docs v: 0.67.0
Versions
latest
stable
0.67.0
0.66.0
0.65.0
0.64.0
0.63.0
0.62.0
0.61.0
0.60.1
0.60.0
0.59.2
0.59.1
0.59.0
0.58.0
0.57.0
0.56.0
0.55.1
0.55.0
0.54.0
0.53.0
0.52.0
0.51.3
0.51.2
0.51.1
0.51.0
0.50.4
0.50.3
0.50.2
0.50.1
0.50.0
0.49.0
0.48.0
0.47.0
0.46.0
0.45.1
0.40.2
0.40.1
0.40.0
0.39.0
0.38.1
0.38.0
0.37.1
0.37.0
0.36.0
0.35.2
0.35.1
0.35.0
0.34.0
0.33.0
0.32.0
0.31.1
0.31.0
0.30.0
0.29.0
0.28.0
0.27.1
0.27.0
0.26.1
0.26.0
0.25.0
0.24.0
0.23.1
0.23.0
0.22.0
0.21.0
0.20.1
0.20.0
0.19.4
0.19.3
0.19.2
0.19.1
0.19.0
0.18.0
0.17.4
0.17.3
0.17.2
0.17.1
0.17.0
0.16.0
0.15.4
0.15.3
0.15.1
0.15.0
0.14.2
0.14.1
0.14.0
0.13.2
0.13.1
0.13.0
0.12.0
0.11.0
0.10.0
0.9.0
0.8.0
0.7.0
0.6.0
0.5.0
0.4.0
0.3.0
0.2.0
0.1.0
v0.0.13
0.0.13
0.0.12
0.0.11
0.0.10
0.0.9
0.0.8
0.0.7
0.0.6
0.0.5
0.0.4
0.0.3
0.0.2
0.0.1
Downloads
html
On Read the Docs
Project Home
Builds

Free document hosting provided by Read the Docs.