MULTIQC

Generate qc report using multiqc.

Example

This meta-wrapper can be used in the following way:

rule multiqc:
    input:
        expand("samtools_stats/{sample}.txt", sample=["a", "b"])
    output:
        "qc/multiqc.html"
    params:
        ""  # Optional: extra parameters for multiqc.
    log:
        "logs/multiqc.log"
    wrapper:
        "0.66.0/bio/multiqc"

Note that input, output and log file paths can be chosen freely. When running with

snakemake --use-conda

the software dependencies will be automatically deployed into an isolated environment before execution.

Authors

  • Julian de Ruiter

Code